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chromatin_summer_school_2022
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2 years ago
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tamas.schauer
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@@ -34,15 +34,15 @@ BiocManager::install(c("ChIPseeker", "GenomicRanges", "rtracklayer", "TxDb.Hsapi
*
[
Workflow management
](
https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/wiki/-/wikis/Workflow-management
)
*
13:00 Lunch
*
14:00 External seminar
*
15:00 Data processing I
*
15:00
[
Data processing I
](
https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/data_processing_1
)
*
Quality Control (
[
FastQC
](
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
)
,
[
multiQC
](
https://multiqc.info
)
)
*
Alignment (
[
Bowtie2
](
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
)
)
*
File formats (
[
fasta
](
https://en.wikipedia.org/wiki/FASTA_format
)
,
[
fastq
](
https://en.wikipedia.org/wiki/FASTQ_format
)
,
[
bam
](
https://en.wikipedia.org/wiki/SAM_(file_format
)
))
### Thursday
*
09:00 Data processing II
*
09:00
[
Data processing II
](
https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/data_processing_2
)
*
Genome coverage (
[
Deeptools
](
https://deeptools.readthedocs.io/en/develop/
)
)
*
Peak finding (
[
MACS2
](
https://github.com/macs3-project/MACS
)
)
*
Genome browser tracks (
[
Deeptools
](
https://deeptools.readthedocs.io/en/develop/
)
)
*
File formats (
[
bed
](
https://en.wikipedia.org/wiki/BED_(file_format
)
),
[
bedgraph
](
https://genome.ucsc.edu/goldenpath/help/bedgraph.html
)
)
*
Interpreting workflow results
*
13:00 Lunch
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