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Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expedition

Tutorials

Installations

  • Install R (version R-4.2.1)
  • Install RStudio (version RStudio-2022.07.0)
  • Install required packages
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install(version = "3.15")
BiocManager::install(c("ChIPseeker", "GenomicRanges", "rtracklayer", "TxDb.Hsapiens.UCSC.hg19.knownGene", "clusterProfiler","AnnotationHub"))

Preliminary Schedule

Wednesday

Thursday

Friday

  • 09:00 Working with peaks in R continued

  • 12:00 Lunch

  • 13:00 Workflow results

    • Looking at actual workflow output folder
    • Review of MultiQC report
    • Comparison of samples with different quality
  • 14:00 External seminar

  • 15:00 Q&A

    • Final bioinformatics discussion
  • 16:00 General course feed back