Your final Snakemake exercise is to apply Snakemake concepts to implement deeptools heatmaps/profile plots in our Snakemake workflow routine.
Hint:
- Before creating the heatmap you need to use computeMatrix
- The TSS coordinates in bed format can be found at data/ensembl_genes_TSS.bed. Alternatively, you can find a script on how to download the TSS dataset here
- A template for the rule can be found at workflow/rules/heatmap.smk, feel free to edit it.
Have fun!