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- [ChIP-Seq](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workflows/nextflow-chip-seq)
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A pipeline or workflow is a good practice in bioinformatics analysis. It consists of a chain of interconnected processing components, arranged in a manner so that the output of each component is the input of the next.
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- [ATAC-Seq](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workflows/nextflow-atac-seq)
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The pipelines shown below were built using [Nextflow](https://www.nextflow.io/), a workflow tool to run tasks across multiple compute infrastructures in a very portable, scalable and reproducible manner.
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- [CUT&RUN/CUT&TAG](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workflows/nextflow-cut-and-run-cut-and-tag/-/tree/main) |
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- [ChIP-Seq pipeline](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workflows/nextflow-chip-seq)
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- [ATAC-Seq pipeline](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workflows/nextflow-atac-seq)
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- [CUT&RUN/CUT&TAG pipeline](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workflows/nextflow-cut-and-run-cut-and-tag/-/tree/main) |
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