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Update home authored by tamas.schauer's avatar tamas.schauer
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...@@ -49,11 +49,11 @@ BiocManager::install(c("ChIPseeker", "GenomicRanges", "rtracklayer", "TxDb.Hsapi ...@@ -49,11 +49,11 @@ BiocManager::install(c("ChIPseeker", "GenomicRanges", "rtracklayer", "TxDb.Hsapi
* Peak finding ([MACS2](https://github.com/macs3-project/MACS)) * Peak finding ([MACS2](https://github.com/macs3-project/MACS))
* File formats ([bed](https://en.wikipedia.org/wiki/BED_(file_format)), [bedgraph](https://genome.ucsc.edu/goldenpath/help/bedgraph.html)) * File formats ([bed](https://en.wikipedia.org/wiki/BED_(file_format)), [bedgraph](https://genome.ucsc.edu/goldenpath/help/bedgraph.html))
* 10:00 [Motif Search](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/motif_search) * 11:00 [Motif Search](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/motif_search)
* consensus peaks with [bedtools](https://bedtools.readthedocs.io/en/latest/) * consensus peaks with [bedtools](https://bedtools.readthedocs.io/en/latest/)
* find motifs with [Homer](http://homer.ucsd.edu/homer/motif/index.html) * find motifs with [Homer](http://homer.ucsd.edu/homer/motif/index.html)
* 11:00 Basic [Dataviz with Deeptools](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/dataviz_deeptools) * 11:30 Basic [Dataviz with Deeptools](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/dataviz_deeptools)
* profile plot * profile plot
* heatmap * heatmap
* 12:00 Snakemake final exercise * 12:00 Snakemake final exercise
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