... | ... | @@ -52,14 +52,14 @@ BiocManager::install(c("ChIPseeker", "GenomicRanges", "rtracklayer", "TxDb.Hsapi |
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### Thursday
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* 9:00 [Motif Search](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/motif_search)
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* consensus peaks with [bedtools](https://bedtools.readthedocs.io/en/latest/)
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* find motifs with [Homer](http://homer.ucsd.edu/homer/motif/index.html)
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* 10:00 Basic [Dataviz with Deeptools](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/dataviz_deeptools)
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* 9:00 [Basic Dataviz with Deeptools](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/dataviz_deeptools)
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* profile plot
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* heatmap
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* 10:00 [Motif Search](https://ascgitlab.helmholtz-muenchen.de/chromatin_summer_school_2022/workshops/motif_search)
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* consensus peaks with [bedtools](https://bedtools.readthedocs.io/en/latest/)
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* find motifs with [Homer](http://homer.ucsd.edu/homer/motif/index.html)
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* 11:00 Snakemake final exercise
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* implement Deeptools profile plot in Snakelike
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... | ... | @@ -74,9 +74,12 @@ BiocManager::install(c("ChIPseeker", "GenomicRanges", "rtracklayer", "TxDb.Hsapi |
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* [GenomicRanges](https://bioconductor.org/packages/release/bioc/html/GenomicRanges.html)
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### Friday
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* 09:00 Data visualization
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* R graphics
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* Peak annotation and comparison ([ChIPseeker](http://bioconductor.org/packages/devel/bioc/vignettes/ChIPseeker/inst/doc/ChIPseeker.html))
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* 13:00 Lunch
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* 14:00 External seminar
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* 15:00 Q&A |
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\ No newline at end of file |