| ... | @@ -5,15 +5,34 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
... | @@ -5,15 +5,34 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
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* UNIX shell
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* UNIX shell
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* R/Rstudio/Bioconductor
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* R/Rstudio/Bioconductor
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## Schedule
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## Preliminary schedule
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### Wednesday
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### Wednesday
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* 09:00 Introduction
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* 09:00 Introduction
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* Computational Reprocibility
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* Computational reproducibility
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* The UNIX command line
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* The UNIX command line
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* Workflow managment
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* Workflow management
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* 12:30 Lunch
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* 12:30 Lunch
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* 14:00 External seminar
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* 14:00 External seminar
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* 15:00 Data processing
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* 15:00 Data processing I
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* File formats
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* Quality Control
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* Alignment
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* Alignment
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* QC |
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### Thursday
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* 09:00 Data processing II
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* Peak finding
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* Genome browser
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* Interpreting workflow results
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* 12:30 Lunch
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* 14:00 External seminar
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* 15:00 Downstream analysis
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* Introduction to R, Rmarkdown and Bioconductor
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* Export/import GenomicRanges
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### Frida
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* 09:00 Data visualiztaion
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* Venn diagrams
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* Correlation heatmaps
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* 12:30 Lunch
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* 14:00 External seminar |
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