... | @@ -5,6 +5,7 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
... | @@ -5,6 +5,7 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
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* UNIX shell commands
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* UNIX shell commands
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* [UNIX Tutorial for Beginners](http://www.ee.surrey.ac.uk/Teaching/Unix/)
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* [UNIX Tutorial for Beginners](http://www.ee.surrey.ac.uk/Teaching/Unix/)
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* [cheat sheet](https://github.com/JREAM/ubuntu-cheatsheet)
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* [cheat sheet](https://github.com/JREAM/ubuntu-cheatsheet)
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* [SLURM quick start](https://slurm.schedmd.com/quickstart.html)
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* R/Rstudio/Bioconductor
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* R/Rstudio/Bioconductor
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* Resources:
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* Resources:
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... | @@ -15,7 +16,7 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
... | @@ -15,7 +16,7 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
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* Computational reproducibility
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* Computational reproducibility
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* The UNIX command line
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* The UNIX command line
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* Workflow management
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* Workflow management
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* 12:30 Lunch
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* 13:00 Lunch
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* 14:00 External seminar
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* 14:00 External seminar
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* 15:00 Data processing I
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* 15:00 Data processing I
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* File formats
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* File formats
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... | @@ -27,7 +28,7 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
... | @@ -27,7 +28,7 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
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* Peak finding
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* Peak finding
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* Genome browser
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* Genome browser
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* Interpreting workflow results
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* Interpreting workflow results
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* 12:30 Lunch
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* 13:00 Lunch
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* 14:00 External seminar
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* 14:00 External seminar
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* 15:00 Downstream analysis
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* 15:00 Downstream analysis
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* Introduction to R, Rmarkdown and Bioconductor
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* Introduction to R, Rmarkdown and Bioconductor
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... | @@ -37,6 +38,6 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
... | @@ -37,6 +38,6 @@ Welcome to the Helmholtz Summer School on Chromatin Biology: A hands-on expediti |
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* 09:00 Data visualization
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* 09:00 Data visualization
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* ggplot2 vs base graphics
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* ggplot2 vs base graphics
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* Peak annotation and comparison [ChIPseeker](http://bioconductor.org/packages/devel/bioc/vignettes/ChIPseeker/inst/doc/ChIPseeker.html)
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* Peak annotation and comparison [ChIPseeker](http://bioconductor.org/packages/devel/bioc/vignettes/ChIPseeker/inst/doc/ChIPseeker.html)
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* 12:30 Lunch
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* 13:00 Lunch
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* 14:00 External seminar
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* 14:00 External seminar
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* 15:00 Q&A |
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* 15:00 Q&A |
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