Commit fb393721 authored by Schauer's avatar Schauer
Browse files

add balcklist slide

parent b4206081
......@@ -377,6 +377,33 @@ include_graphics("files/igv_snapshot_4.png")
```
## Peak Filtering
**blacklist regions**: erroneous signal, artifacts
- extermely high signal
- present in ChIP input controls
<p>&nbsp;</p>
- low mappability
- short repeats
<p>&nbsp;</p>
\tiny
Amemiya, H.M., Kundaje, A. & Boyle, A.P. The ENCODE Blacklist: Identification of Problematic Regions of the Genome. Sci Rep 9, 9354 (2019). https://doi.org/10.1038/s41598-019-45839-z
## Peak Filtering
- extermely high signal
```{r, echo=FALSE, fig.align='center', out.width = "200px"}
include_graphics("files/blacklist.png")
```
\tiny
Amemiya, H.M., Kundaje, A. & Boyle, A.P. The ENCODE Blacklist: Identification of Problematic Regions of the Genome. Sci Rep 9, 9354 (2019). https://doi.org/10.1038/s41598-019-45839-z
## MultiQC Report
......
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